1TGO Transferase date Feb 23, 1999
title Thermostable B Type Dna Polymerase From Thermococcus Gorgonarius
authors K.P.Hopfner, A.Eichinger, R.A.Engh, F.Laue, W.Ankenbauer, R.Huber, B.Angerer
compound source
Molecule: Protein (Thermostable B Dna Polymerase)
Chain: A
Engineered: Yes
Organism_scientific: Thermococcus Gorgonarius
Organism_taxid: 71997
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_cellular_location: Cytoplasm
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.271
length a length b length c angle alpha angle beta angle gamma
58.110 105.220 154.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1D5A, 1QQC
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity

  • Primary referenceCrystal structure of a thermostable type B DNA polymerase from Thermococcus gorgonarius., Hopfner KP, Eichinger A, Engh RA, Laue F, Ankenbauer W, Huber R, Angerer B, Proc Natl Acad Sci U S A 1999 Mar 30;96(7):3600-5. PMID:10097083
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (1tgo.pdb1.gz) 135 Kb
  • CSU: Contacts of Structural Units for 1TGO
  • Likely Quarternary Molecular Structure file(s) for 1TGO
  • Retrieve 1TGO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TGO from S2C, [Save to disk]
  • View 1TGO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TGO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TGO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tgoa1, region A:1-347 [Jmol] [rasmolscript] [script source]
        - Domain d1tgoa2, region A:348-773 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tgo] [1tgo_A]
  • SWISS-PROT database: [P56689]
  • Domain organization of [DPOL_THEGO] by SWISSPFAM
  • Domain found in 1TGO: [POLBc ] by SMART
  • Other resources with information on 1TGO
  • Community annotation for 1TGO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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