1TLI Hydrolase date Oct 27, 1998
title Thermolysin (2% Isopropanol Soaked Crystals)
authors A.C.English, S.H.Done, C.R.Groom, R.E.Hubbard
compound source
Molecule: Thermolysin
Chain: A
Ec: 3.4.24.27
Organism_scientific: Bacillus Thermoproteolyticus
Organism_taxid: 1427
symmetry Space Group: P 61 2 2
R_factor 0.165 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.930 93.930 130.910 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand CA, DMS, ZN enzyme Hydrolase E.C.3.4.24.27 BRENDA
related structures by homologous chain: 1NPC, 1QF2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLocating interaction sites on proteins: the crystal structure of thermolysin soaked in 2% to 100% isopropanol., English AC, Done SH, Caves LS, Groom CR, Hubbard RE, Proteins 1999 Dec 1;37(4):628-40. PMID:10651278
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1tli.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 1TLI
  • CSU: Contacts of Structural Units for 1TLI
  • Likely Quarternary Molecular Structure file(s) for 1TLI
  • Structure Factors (158 Kb)
  • Retrieve 1TLI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TLI from S2C, [Save to disk]
  • Re-refined 1tli structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TLI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TLI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TLI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tlia_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tli_A] [1tli]
  • SWISS-PROT database: [P00800]
  • Domain organization of [THER_BACTH] by SWISSPFAM
  • Other resources with information on 1TLI
  • Community annotation for 1TLI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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