1TPG Plasminogen Activation date Jun 14, 1995
title F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type Plasmin Activator (T-Pa) (Nmr, 298k, Ph2.95, Representative Structu
authors B.O.Smith, A.K.Downing, P.C.Driscoll, T.J.Dudgeon, I.D.Campbell
compound source
Molecule: T-Plasminogen Activator F1-G
Chain: A
Ec: 3.4.21.68
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_plasmid: Psw6
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.21.68 BRENDA
related structures by homologous chain: 1TPM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure and backbone dynamics of the fibronectin type I and epidermal growth factor-like pair of modules of tissue-type plasminogen activator., Smith BO, Downing AK, Driscoll PC, Dudgeon TJ, Campbell ID, Structure 1995 Aug 15;3(8):823-33. PMID:7582899
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1tpg.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1TPG
  • Retrieve 1TPG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TPG from S2C, [Save to disk]
  • View 1TPG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TPG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TPG, from MSDmotif at EBI
  • Genome occurence of 1TPG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tpg_2, region 1-50 [Jmol] [rasmolscript] [script source]
        - Domain d1tpg_1, region 51-91 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tpg_A] [1tpg]
  • SWISS-PROT database: [P00750]
  • Domain organization of [TPA_HUMAN] by SWISSPFAM
  • Domains found in 1TPG: [EGF] [FN1 ] by SMART
  • Other resources with information on 1TPG
  • Community annotation for 1TPG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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