1TQE	Transcription Protein Binding Dna	date	Jun 17, 2004
title	Mechanism Of Recruitment Of Class II Histone Deacetylases By Enhancer Factor-2
authors	L.Chen, A.Han, J.He, Y.Wu, J.O.Liu
compound		source
Molecule: Mef2 Binding Site Of Nur77 Promoter Chain: C, E Engineered: Yes		Synthetic: Yes
Molecule: Mef2 Binding Site Of Nur77 Promoter Chain: D, F Engineered: Yes		Synthetic: Yes
Molecule: Myocyte-Specific Enhancer Factor 2b Chain: P, Q, R, S Fragment: Residues 1-93 Synonym: Serum Response Factor-Like Protein 2, Xmef2, Rsrfr Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Plyss Expression_system_vector_type: T7 Expression_system_plasmid: Pet28a
Molecule: Histone Deacetylase 9 Chain: X, Y Fragment: Residues 138-158 Synonym: Hd9, Hd7b, Histone Deacetylase-Related Protein, Me Interacting Transcription Repressor Mitr; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Plyss Expression_system_vector_type: T7 Expression_system_plasmid: Pet28a
symmetry	Space Group: P 1	R_factor 0.263 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.797 66.930 66.967 76.67 71.83 71.81
method	X-Ray Diffraction	resolution	2.70 Å
related structures	by homologous chain: 1C7U, 1N6J
Gene Ontology	Chain Function Process Component S, Q, R, P
Primary reference	Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2., Han A, He J, Wu Y, Liu JO, Chen L, J Mol Biol 2005 Jan 7;345(1):91-102. PMID:15567413

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (1tqe.pdb1.gz) 47 Kb Biological Unit Coordinates (1tqe.pdb2.gz) 47 Kb CSU: Contacts of Structural Units for 1TQE Likely Quarternary Molecular Structure file(s) for 1TQE Structure Factors (445 Kb) Retrieve 1TQE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1TQE from S2C, [Save to disk] Re-refined 1tqe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1TQE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TQE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1TQE, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1tqep_, region P [Jmol] [rasmolscript] [script source]     - Domain d1tqeq_, region Q [Jmol] [rasmolscript] [script source]     - Domain d1tqer_, region R [Jmol] [rasmolscript] [script source]     - Domain d1tqes_, region S [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tqe_S] [1tqe_D] [1tqe_P] [1tqe_Q] [1tqe_X] [1tqe_R] [1tqe] [1tqe_F] [1tqe_Y] [1tqe_E] [1tqe_C] SWISS-PROT database: [Q99N13] [Q02080] Domain organization of [HDAC9_MOUSE] [MEF2B_HUMAN] by SWISSPFAM Domain found in 1TQE: [MADS ] by SMART

Other resources with information on 1TQE

Community annotation for 1TQE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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