1TRA T-Rna date May 16, 1986
title Restrained Refinement Of The Monoclinic Form Of Yeast Phenyl Transfer Rna. Temperature Factors And Dynamics, Coordinated And Base-Pair Propeller Twist Angles
authors E.Westhof, M.Sundaralingam
compound source
Molecule: Trnaphe
Chain: A
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.000 33.300 63.000 90.00 90.40 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 1MA, 2MG, 5MC, 5MU, 7MG, H2U, M2G, MG, OMC, OMG, PSU, YG enzyme
note 1TRA supersedes 8TNA, 7TNA, 2TNA
Primary referenceRestrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles., Westhof E, Sundaralingam M, Biochemistry 1986 Aug 26;25(17):4868-78. PMID:3533142
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1tra.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1TRA
  • CSU: Contacts of Structural Units for 1TRA
  • Likely Quarternary Molecular Structure file(s) for 1TRA
  • Retrieve 1TRA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TRA from S2C, [Save to disk]
  • View 1TRA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TRA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TRA, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Fold representative 1tra from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tra] [1tra_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1TRA
  • Community annotation for 1TRA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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