1TS8	Photoreceptor	date	Jun 21, 2004
title	Structure Of The Pr Cis Planar Intermediate From Time-Resolv Crystallography
authors	H.Ihee, S.Rajagopal, V.Srajer, R.Pahl, S.Anderson, M.Schmidt, F.Sc P.A.Anfinrud, M.Wulff, K.Moffat
compound		source
Molecule: Photoactive Yellow Protein Chain: A Synonym: Pyp Engineered: Yes		Organism_scientific: Halorhodospira Halophila Organism_taxid: 1053 Gene: Pyp Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 63	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.833 66.833 40.947 90.00 90.00 120.00
method	X-Ray Diffraction, 2 Models	resolution	1.60 Å
ligand	HC4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds., Ihee H, Rajagopal S, Srajer V, Pahl R, Anderson S, Schmidt M, Schotte F, Anfinrud PA, Wulff M, Moffat K, Proc Natl Acad Sci U S A 2005 May 17;102(20):7145-50. Epub 2005 May 3. PMID:15870207

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk] Biological Unit Coordinates (1ts8.pdb1.gz) 21 Kb LPC: Ligand-Protein Contacts for 1TS8 CSU: Contacts of Structural Units for 1TS8 Structure Factors (86 Kb) Retrieve 1TS8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1TS8 from S2C, [Save to disk]

View 1TS8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TS8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1TS8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ts8_A] [1ts8] SWISS-PROT database: [P16113] Domain organization of [PYP_HALHA] by SWISSPFAM Domain found in 1TS8: [PAS ] by SMART

Other resources with information on 1TS8

Community annotation for 1TS8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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