1TWL Hydrolase date Jul 01, 2004
title Inorganic Pyrophosphatase From Pyrococcus Furiosus Pfu-26409
authors W.Zhou, W.Tempel, Z.J.Liu, L.Chen, L.L.Clancy Kelley, B.D.Dilla R.C.Hopkins, W.B.Arendall Iii, J.P.Rose, J.C.Eneh, R.C.Hopkins, F.E.Jenney Jr., H.S.Lee, T.Li, F.L.Poole Ii, C.Shah, F.J.Sugar, M.W.W.Adams, J.S.Richardson, D.C.Richardson, B.C.Wang, Southea Collaboratory For Structural Genomics (Secsg)
compound source
Molecule: Inorganic Pyrophosphatase
Chain: A
Synonym: Pyrophosphate Phospho-Hydrolase, Ppase
Ec: 3.6.1.1
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Gene: Ppa, Pf0257
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3 2
R_factor 0.194 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.434 113.434 73.313 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Hydrolase E.C.3.6.1.1 BRENDA
related structures by homologous chain: 1UDE
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1twl.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (1twl.pdb2.gz) 167 Kb
  • CSU: Contacts of Structural Units for 1TWL
  • Likely Quarternary Molecular Structure file(s) for 1TWL
  • Structure Factors (162 Kb)
  • Retrieve 1TWL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TWL from S2C, [Save to disk]
  • Re-refined 1twl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TWL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TWL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TWL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1twla_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1twl] [1twl_A]
  • SWISS-PROT database: [Q8U438]
  • Domain organization of [IPYR_PYRFU] by SWISSPFAM
  • Other resources with information on 1TWL
  • Community annotation for 1TWL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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