1U2V Structural Protein date Jul 20, 2004
title Crystal Structure Of Arp23 Complex With Bound Adp And Calcium
authors B.J.Nolen, R.S.Littlefield, T.D.Pollard
compound source
Molecule: Actin-Related Protein 3
Chain: A
Synonym: Actin-Like Protein 3, Actin-2
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Tissue: Thymus

Molecule: Actin-Related Protein 2
Chain: B
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Tissue: Thymus

Molecule: Arp23 Complex 41kda Subunit
Chain: C
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Tissue: Thymus

Molecule: Arp23 Complex 34kda Subunit
Chain: D
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Tissue: Thymus

Molecule: Arp23 Complex 21kda Subunit
Chain: E
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Tissue: Thymus

Molecule: Arp23 Complex 20kda Subunit
Chain: F
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Tissue: Thymus

Molecule: Arp23 Complex 16kda Subunit
Chain: G
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Tissue: Thymus
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.300 129.300 204.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand ADP, CA enzyme
related structures by homologous chain: 1K8K, 1TYQ
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


Primary referenceCrystal structures of actin-related protein 2/3 complex with bound ATP or ADP., Nolen BJ, Littlefield RS, Pollard TD, Proc Natl Acad Sci U S A 2004 Nov 2;101(44):15627-32. Epub 2004 Oct 25. PMID:15505213
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]
  • Biological Unit Coordinates (1u2v.pdb1.gz) 282 Kb
  • Biological Unit Coordinates (1u2v.pdb2.gz) 283 Kb
  • LPC: Ligand-Protein Contacts for 1U2V
  • CSU: Contacts of Structural Units for 1U2V
  • Likely Quarternary Molecular Structure file(s) for 1U2V
  • Structure Factors (755 Kb)
  • Retrieve 1U2V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U2V from S2C, [Save to disk]
  • Re-refined 1u2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1U2V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1U2V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U2V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u2va2, region A:161-418 [Jmol] [rasmolscript] [script source]
        - Domain d1u2va1, region A:2-160 [Jmol] [rasmolscript] [script source]
        - Domain d1u2vb1, region B:147-350 [Jmol] [rasmolscript] [script source]
        - Domain d1u2vc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1u2vd1, region D:1-120 [Jmol] [rasmolscript] [script source]
        - Domain d1u2vd2, region D:121-282 [Jmol] [rasmolscript] [script source]
        - Domain d1u2ve_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1u2vf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1u2vg_, region G [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u2v] [1u2v_F] [1u2v_B] [1u2v_A] [1u2v_D] [1u2v_G] [1u2v_E] [1u2v_C]
  • SWISS-PROT database: [Q58CQ2] [A7MB62] [P61157] [Q3MHR7] [Q3T035] [Q148J6] [Q3SYX9]
  • Domain organization of [ARC1B_BOVIN] [ARP2_BOVIN] [ARP3_BOVIN] [ARPC2_BOVIN] [ARPC3_BOVIN] [ARPC4_BOVIN] [ARPC5_BOVIN] by SWISSPFAM
  • Domains found in 1U2V: [ACTIN] [WD40 ] by SMART
    • Other resources with information on 1U2V
  • Community annotation for 1U2V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science