1U67 Oxidoreductase date Jul 29, 2004
title Crystal Structure Of Arachidonic Acid Bound To A Mutant Of Prostagladin H Synthase-1 That Forms Predominantly 11-Hpete
authors C.A.Harman, C.J.Rieke, R.M.Garavito, W.L.Smith
compound source
Molecule: Prostaglandin Gh Synthase 1 Precursor
Chain: A
Synonym: Cyclooxygenase-1, Cox-1, Prostaglandin-Endoperoxid 1, Prostaglandin H2 Synthase 1, Pgh Synthase 1, Pghs-1, Phs
Ec: 1.14.99.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Ovis Aries
Organism_common: Sheep
Organism_taxid: 9940
Gene: Ptgs1, Cox1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf21
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac-Htocox-1
symmetry Space Group: P 65 2 2
R_factor 0.238 R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.879 181.879 103.368 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
ligand ACD, BMA, BOG, COH, NAG, NDG enzyme Oxidoreductase E.C.1.14.99.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of arachidonic acid bound to a mutant of prostaglandin endoperoxide H synthase-1 that forms predominantly 11-HPETE., Harman CA, Rieke CJ, Garavito RM, Smith WL, J Biol Chem 2004 Jul 30;. PMID:15292194
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (1u67.pdb1.gz) 167 Kb
  • LPC: Ligand-Protein Contacts for 1U67
  • CSU: Contacts of Structural Units for 1U67
  • Likely Quarternary Molecular Structure file(s) for 1U67
  • Structure Factors (155 Kb)
  • Retrieve 1U67 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U67 from S2C, [Save to disk]
  • Re-refined 1u67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1U67 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U67
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1U67, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u67a2, region A:32-73 [Jmol] [rasmolscript] [script source]
        - Domain d1u67a1, region A:74-584 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u67] [1u67_A]
  • SWISS-PROT database: [P05979]
  • Domain organization of [PGH1_SHEEP] by SWISSPFAM
  • Domain found in 1U67: [EGF ] by SMART
  • Other resources with information on 1U67
  • Community annotation for 1U67 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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