1UFF Endocytosis Exocytosis date May 29, 2003
title Solution Structure Of The First Sh3 Domain Of Human Intersec (Kiaa1256)
authors N.Kobayashi, T.Kigawa, S.Koshiba, N.Tochio, M.Inoue, S.Yokoyama, R Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Intersectin 2
Chain: A
Fragment: Sh3 Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Hh15293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P021015-27
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (446 Kb) [Save to disk]
  • Biological Unit Coordinates (1uff.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1UFF
  • Retrieve 1UFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UFF from S2C, [Save to disk]
    • View 1UFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UFF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UFF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uffa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uff_A] [1uff]
  • SWISS-PROT database: [Q9NZM3]
  • Domain organization of [ITSN2_HUMAN] by SWISSPFAM
  • Domain found in 1UFF: [SH3 ] by SMART
    • Other resources with information on 1UFF
  • Community annotation for 1UFF at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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