1UMG Hydrolase date Sep 30, 2003
title Crystal Structure Of Fructose-1,6-Bisphosphatase
authors H.Nishimasu, S.Fushinobu, H.Shoun, T.Wakagi
compound source
Molecule: 385aa Long Conserved Hypothetical Protein
Chain: A
Fragment: Residues 3-364
Synonym: Fructose-1,6-Bisphosphatase
Ec: 3.1.3.11
Engineered: Yes
Organism_scientific: Sulfolobus Tokodaii Str. 7
Organism_taxid: 273063
Strain: Strain 7
Gene: St0318
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17b
symmetry Space Group: I 4 2 2
R_factor 0.183 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.778 111.778 153.174 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 2FP, MG, MPD enzyme Hydrolase E.C.3.1.3.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe first crystal structure of the novel class of fructose-1,6-bisphosphatase present in thermophilic archaea., Nishimasu H, Fushinobu S, Shoun H, Wakagi T, Structure. 2004 Jun;12(6):949-59. PMID:15274916
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (1umg.pdb1.gz) 484 Kb
  • LPC: Ligand-Protein Contacts for 1UMG
  • CSU: Contacts of Structural Units for 1UMG
  • Likely Quarternary Molecular Structure file(s) for 1UMG
  • Structure Factors (843 Kb)
  • Retrieve 1UMG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UMG from S2C, [Save to disk]
  • Re-refined 1umg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UMG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UMG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UMG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1umga_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1umg_A] [1umg]
  • SWISS-PROT database: [Q975V5]
  • Domain organization of [Q975V5_SULTO] by SWISSPFAM
  • Other resources with information on 1UMG
  • Community annotation for 1UMG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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