1UR6 Ligase date Oct 27, 2003
title Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
authors C.Dominguez, A.M.J.J.Bonvin, G.S.Winkler, F.M.A.Van Schaik, H.Th.M.Timmers, R.Boelens
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2-17 Kda 2
Chain: A
Synonym: Ubch5b, Ubiquitin Carrier Protein, E2(17)Kb 2
Ec: 6.3.2.19
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Potential Transcriptional Repressor Not4hp
Chain: B
Fragment: Ring Finger, Residues 12-63
Synonym: Cnot4, Not4h
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR; Theoretical Model
ligand ZN enzyme Ligase E.C.6.3.2.19 BRENDA
note 1UR6 is a representative structure
related structures by homologous chain: 1E4U, 1QCQ, 1W4U
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural model of the UbcH5B/CNOT4 complex revealed by combining NMR, mutagenesis, and docking approaches., Dominguez C, Bonvin AM, Winkler GS, van Schaik FM, Timmers HT, Boelens R, Structure (Camb) 2004 Apr;12(4):633-44. PMID:15062086
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (285 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1UR6
  • CSU: Contacts of Structural Units for 1UR6
  • Retrieve 1UR6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UR6 from S2C, [Save to disk]
    • View 1UR6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UR6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UR6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ur6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ur6b_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ur6_B] [1ur6] [1ur6_A]
  • SWISS-PROT database: [O95628] [P62837]
  • Belongs to the peroxisomal protein importer (ppi) family according to TCDB.
  • Domain organization of [CNOT4_HUMAN] [UB2D2_HUMAN] by SWISSPFAM
  • Domains found in 1UR6: [RING] [UBCc ] by SMART
    • Other resources with information on 1UR6
  • Community annotation for 1UR6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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