OCA Atlas for 1UW0

1UW0

Ligase

date

Jan 27, 2004

title

Solution Structure Of The Zinc-Finger Domain From Dna Ligase Iiia

authors

A.W.Kulczyk, J.C.Yang, D.Neuhaus

compound

source

Molecule: Dna Ligase III
Chain: A
Fragment: Zinc-Finger Domain, Residues 1-117
Synonym: Polydeoxyribonucleotide Synthase [Atp]
Ec: 6.5.1.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Codon Plus Rp
Expression_system_plasmid: Pet28a

method

Solution NMR

ligand

enzyme

Ligase E.C.6.5.1.1 BRENDA

note

1UW0 is a representative structure

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Solution structure and DNA binding of the zinc-finger domain from DNA ligase IIIalpha., Kulczyk AW, Yang JC, Neuhaus D, J Mol Biol. 2004 Aug 13;341(3):723-38. PMID:15288782

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (879 Kb) [Save to disk]

LPC: Ligand-Protein Contacts for 1UW0

CSU: Contacts of Structural Units for 1UW0

Original NMR restraints for 1UW0 from PDB

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1UW0 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1UW0 from S2C, [Save to disk]

View 1UW0 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UW0

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1UW0, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1uw0a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uw0_A] [1uw0]

SWISS-PROT database: [P49916]

Domain organization of [DNLI3_HUMAN] by SWISSPFAM

Domain found in 1UW0: [zf-PARP ] by SMART

Other resources with information on 1UW0

Community annotation for 1UW0 at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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