1UWB Aspartyl Protease date Nov 21, 1996
title Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
authors K.Das, J.Ding, Y.Hsiou, E.Arnold
compound source
Molecule: Reverse Transcriptase
Chain: A
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Strain: Bh10
Cell_line: 293
Atcc: 1065288
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 293

Molecule: Reverse Transcriptase
Chain: B
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Strain: Bh10
Cell_line: 293
Atcc: 1065288
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 293
symmetry Space Group: C 1 2 1
R_factor 0.274 R_Free 0.360
crystal
cell
length a length b length c angle alpha angle beta angle gamma
225.700 69.200 104.900 90.00 106.60 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand TBO BindingDB enzyme Transferase E.C.2.7.7.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal structures of 8-Cl and 9-Cl TIBO complexed with wild-type HIV-1 RT and 8-Cl TIBO complexed with the Tyr181Cys HIV-1 RT drug-resistant mutant., Das K, Ding J, Hsiou Y, Clark AD Jr, Moereels H, Koymans L, Andries K, Pauwels R, Janssen PA, Boyer PL, Clark P, Smith RH Jr, Kroeger Smith MB, Michejda CJ, Hughes SH, Arnold E, J Mol Biol 1996 Dec 20;264(5):1085-100. PMID:9000632
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (1uwb.pdb1.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 1UWB
  • CSU: Contacts of Structural Units for 1UWB
  • Likely Quarternary Molecular Structure file(s) for 1UWB
  • Structure Factors (318 Kb)
  • Retrieve 1UWB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UWB from S2C, [Save to disk]
  • Re-refined 1uwb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UWB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UWB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UWB, from MSDmotif at EBI
  • Genome occurence of 1UWB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uwba2, region A:1-429 [Jmol] [rasmolscript] [script source]
        - Domain d1uwba1, region A:430-558 [Jmol] [rasmolscript] [script source]
        - Domain d1uwbb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1uwb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uwb] [1uwb_B] [1uwb_A]
  • SWISS-PROT database: [P03366]
  • Domain organization of [POL_HV1B1] by SWISSPFAM
  • Other resources with information on 1UWB
  • Community annotation for 1UWB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1UWB from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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