1UXM	Oxidoreductase	date	Feb 26, 2004
title	A4v Mutant Of Human Sod1
authors	M.A.Hough, J.G.Grossmann, S.V.Antonyuk, R.W.Strange, P.A.Doucett J.A.Rodriguez, L.J.Whitson, P.J.Hart, L.J.Hayward, J.S.Valentin S.S.Hasnain
compound		source
Molecule: Superoxide Dismutase [Cu-Zn] Chain: A, B, C, D, E, F, G, H, I, J, K, L Ec: 1.15.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 Expression_system_strain: Eg118 Expression_system_variant: Yep351
symmetry	Space Group: P 1 21 1	R_factor 0.228 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 112.374 145.582 112.497 90.00 120.05 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	CU, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
related structures	by homologous chain: 1AZV, 1SXB
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L superoxide dismutase activit... protein binding anterograde axonal transport... retrograde axonal transport
Primary reference	Dimer destabilization in superoxide dismutase may result in disease-causing properties: structures of motor neuron disease mutants., Hough MA, Grossmann JG, Antonyuk SV, Strange RW, Doucette PA, Rodriguez JA, Whitson LJ, Hart PJ, Hayward LJ, Valentine JS, Hasnain SS, Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):5976-81. Epub 2004 Mar 31. PMID:15056757

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (296 Kb) [Save to disk] Biological Unit Coordinates (1uxm.pdb1.gz) 54 Kb Biological Unit Coordinates (1uxm.pdb2.gz) 54 Kb Biological Unit Coordinates (1uxm.pdb3.gz) 52 Kb Biological Unit Coordinates (1uxm.pdb4.gz) 52 Kb Biological Unit Coordinates (1uxm.pdb5.gz) 52 Kb Biological Unit Coordinates (1uxm.pdb6.gz) 52 Kb LPC: Ligand-Protein Contacts for 1UXM CSU: Contacts of Structural Units for 1UXM Likely Quarternary Molecular Structure file(s) for 1UXM Structure Factors (3470 Kb) Retrieve 1UXM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UXM from S2C, [Save to disk] Re-refined 1uxm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UXM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UXM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UXM, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1uxma_, region A [Jmol] [rasmolscript] [script source]     - Domain d1uxmb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1uxmc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1uxmd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1uxme_, region E [Jmol] [rasmolscript] [script source]     - Domain d1uxmf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1uxmg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1uxmh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1uxmi_, region I [Jmol] [rasmolscript] [script source]     - Domain d1uxmj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1uxmk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1uxml_, region L [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uxm_C] [1uxm_D] [1uxm_L] [1uxm_H] [1uxm_K] [1uxm_A] [1uxm_G] [1uxm_E] [1uxm] [1uxm_J] [1uxm_B] [1uxm_F] [1uxm_I] SWISS-PROT database: [P00441] Domain organization of [SODC_HUMAN] by SWISSPFAM

Other resources with information on 1UXM

Community annotation for 1UXM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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