1AZV Oxidoreductase date Nov 21, 1997
title Familial Als Mutant G37r Cuznsod (Human)
authors P.J.Hart, H.Liu, M.Pellegrini, A.M.Nersissian, E.B.Gralla, J.S.Valentine, D.Eisenberg
compound source
Molecule: Copperzinc Superoxide Dismutase
Chain: A, B
Synonym: Cuznsod
Ec: 1.15.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cytoplasm
Gene: Sod1
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Eg118
Expression_system_cellular_location: Cytoplasm
Expression_system_vector: Yep351
Expression_system_gene: Yeast Cuznsod Promoter
symmetry Space Group: P 41
R_factor 0.202 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.200 67.200 83.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CU, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1SXN, 1UXM
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

  • Primary referenceSubunit asymmetry in the three-dimensional structure of a human CuZnSOD mutant found in familial amyotrophic lateral sclerosis., Hart PJ, Liu H, Pellegrini M, Nersissian AM, Gralla EB, Valentine JS, Eisenberg D, Protein Sci 1998 Mar;7(3):545-55. PMID:9541385
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1azv.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1AZV
  • CSU: Contacts of Structural Units for 1AZV
  • Likely Quarternary Molecular Structure file(s) for 1AZV
  • Structure Factors (225 Kb)
  • Retrieve 1AZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AZV from S2C, [Save to disk]
  • Re-refined 1azv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AZV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1AZV, from MSDmotif at EBI
  • Genome occurence of 1AZV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1azva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1azvb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1azv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1azv_A] [1azv_B] [1azv]
  • SWISS-PROT database: [P00441]
  • Domain organization of [SODC_HUMAN] by SWISSPFAM
  • Other resources with information on 1AZV
  • Community annotation for 1AZV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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