1UZD	Lyase	date	Mar 11, 2004
title	Chlamydomonas,Spinach Chimeric Rubisco
authors	S.Karkehabadi, R.J.Spreitzer, I.Andersson
compound		source
Molecule: Ribulose Bisphosphate Carboxylase Large Chain Chain: A, B, E, H, K, O, R, V Synonym: Rubisco Large Subunit Ec: 4.1.1.39		Organism_scientific: Chlamydomonas Reinhardtii Organism_taxid: 3055
Molecule: Ribulose Bisphosphate Carboxylase Small Chain 1, Chloroplastic,Ribulose Bisphosphate Carboxylase Small Chain Chloroplastic,Ribulose Bisphosphate Carboxylase Small Chain Chloroplastic; Chain: C, F, I, J, M, P, T, W Synonym: Rubisco Small Subunit 2,Rubisco Small Subunit 1 Ec: 4.1.1.39,4.1.1.39,4.1.1.39 Engineered: Yes Other_details: One Loop Of Chlamydomonas Rubisco, Residues Asn70 Has Been Replaced With The Corresponding Loop From Sp Rubisco, Residues Thr46 - Gly64,One Loop Of Chlamydomonas R Residues Glu46-Asn70 Has Been Replaced With The Correspondi From Spinach Rubisco, Residues Thr46 - Gly64		Organism_scientific: Chlamydomonas Reinhardtii, Spinacia Ol Organism_common: Spinach Organism_taxid: 3055, 3562 Gene: Rbcs-1, Chlre_02g120100v5, Chlredraft_82986, Rbcs2 Expression_system: Chlamydomonas Reinhardtii Expression_system_taxid: 3055
symmetry	Space Group: P 21 21 2	R_factor 0.188 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 220.014 224.078 111.725 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CAP, EDO, HYP, KCX, MG, SMC	enzyme	Lyase E.C.4.1.1.39 BRENDA
related structures	by homologous chain: 1RCX, 1UPP
Gene Ontology	Chain Function Process Component H, A, O, R, K, E, B, V
Primary reference	Chimeric small subunits influence catalysis without causing global conformational changes in the crystal structure of ribulose-1,5-bisphosphate carboxylase/oxygenase., Karkehabadi S, Peddi SR, Anwaruzzaman M, Taylor TC, Cederlund A, Genkov T, Andersson I, Spreitzer RJ, Biochemistry. 2005 Jul 26;44(29):9851-61. PMID:16026157

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (796 Kb) [Save to disk] Biological Unit Coordinates (1uzd.pdb1.gz) 783 Kb LPC: Ligand-Protein Contacts for 1UZD CSU: Contacts of Structural Units for 1UZD Likely Quarternary Molecular Structure file(s) for 1UZD Structure Factors (1748 Kb) Retrieve 1UZD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UZD from S2C, [Save to disk] Re-refined 1uzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UZD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UZD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UZD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uzd_E] [1uzd_H] [1uzd_V] [1uzd_C] [1uzd] [1uzd_J] [1uzd_K] [1uzd_F] [1uzd_T] [1uzd_R] [1uzd_A] [1uzd_I] [1uzd_P] [1uzd_M] [1uzd_B] [1uzd_O] [1uzd_W] SWISS-PROT database: [P00877] [P00873] [Q43832] Domain organization of [RBL_CHLRE] [RBS1_CHLRE] [RBS2_SPIOL] by SWISSPFAM Domain found in 1UZD: [RuBisCO_small ] by SMART

Other resources with information on 1UZD

Community annotation for 1UZD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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