1V0D	Crystal Structure of Caspase-activated DNase (CAD)	date
authors	Woo, E.J., Kim, Y.G., Kim, M.S., Han, W.D., Shin, S., Oh, B.H.
compound		source
symmetry		R_factor R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.60
ligand	MG, PB, ZN	enzyme
note	1V0D (Molecule of the Month:pdb56)
Gene Ontology	Chain Function Process Component A
Primary reference	Structural mechanism for inactivation and activation of CAD/DFF40 in the apoptotic pathway., Woo EJ, Kim YG, Kim MS, Han WD, Shin S, Robinson H, Park SY, Oh BH, Mol Cell 2004 May 21;14(4):531-9. PMID:15149602

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (1v0d.pdb1.gz) 79 Kb LPC: Ligand-Protein Contacts for 1V0D CSU: Contacts of Structural Units for 1V0D Likely Quarternary Molecular Structure file(s) for 1V0D Structure Factors (203 Kb) Retrieve 1V0D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1V0D from S2C, [Save to disk] Re-refined 1v0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V0D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1V0D

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1V0D, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1v0da_, region A [Jmol] [rasmolscript] [script source] Fold representative 1v0d from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v0d] [1v0d_A] SWISS-PROT database: [O54788] Domain organization of [DFFB_MOUSE] by SWISSPFAM Domain found in 1V0D: [CAD ] by SMART

Other resources with information on 1V0D

Community annotation for 1V0D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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