OCA Atlas for 1V4P

1V4P

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

note

1V4P is a representative structure

related structures

by homologous chain: 1V7O

Gene
Ontology

Chain	Function	Process	Component
A, C, B	aminoacyl-tRNA editing activ...

Primary reference

Crystal structure of alanyl-tRNA synthetase editing-domain homolog (PH0574) from a hyperthermophile, Pyrococcus horikoshii OT3 at 1.45 A resolution., Ishijima J, Uchida Y, Kuroishi C, Tuzuki C, Takahashi N, Okazaki N, Yutani K, Miyano M, Proteins. 2005 Dec 22;. PMID:16374837

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]

Biological Unit Coordinates (1v4p.pdb1.gz) 29 Kb

Biological Unit Coordinates (1v4p.pdb2.gz) 30 Kb

Biological Unit Coordinates (1v4p.pdb3.gz) 30 Kb

Biological Unit Coordinates (1v4p.pdb4.gz) 57 Kb

LPC: Ligand-Protein Contacts for 1V4P

CSU: Contacts of Structural Units for 1V4P

Likely Quarternary Molecular Structure file(s) for 1V4P

Structure Factors (610 Kb)

Retrieve 1V4P in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1V4P from S2C, [Save to disk]

Re-refined 1v4p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V4P in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v4p] [1v4p_A] [1v4p_B] [1v4p_C]

SWISS-PROT database: [O58307]

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