1V9L	Oxidoreductase	date	Jan 26, 2004
title	L-Glutamate Dehydrogenase From Pyrobaculum Islandicum Comple Nad
authors	M.W.Bhuiya, H.Sakuraba, T.Ohshima, T.Imagawa, N.Katunuma, H.Tsuge
compound		source
Molecule: Glutamate Dehydrogenase Chain: A, B, C, D, E, F Synonym: Hyperthermostable Nad-Dependent L-Glutamate Dehydr Ec: 1.4.1.2 Engineered: Yes		Organism_scientific: Pyrobaculum Islandicum Organism_taxid: 2277 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 21 21 21	R_factor 0.200 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.210 165.880 181.350 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	NAD	enzyme	Oxidoreductase E.C.1.4.1.2 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	The first crystal structure of hyperthermostable NAD-dependent glutamate dehydrogenase from Pyrobaculum islandicum., Bhuiya MW, Sakuraba H, Ohshima T, Imagawa T, Katunuma N, Tsuge H, J Mol Biol 2005 Jan 14;345(2):325-37. PMID:15571725

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (402 Kb) [Save to disk] Biological Unit Coordinates (1v9l.pdb1.gz) 395 Kb LPC: Ligand-Protein Contacts for 1V9L CSU: Contacts of Structural Units for 1V9L Likely Quarternary Molecular Structure file(s) for 1V9L Retrieve 1V9L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1V9L from S2C, [Save to disk]

View 1V9L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1V9L

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1V9L, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1v9la1, region A:180-421 [Jmol] [rasmolscript] [script source]     - Domain d1v9la2, region A:4-179 [Jmol] [rasmolscript] [script source]     - Domain d1v9lb1, region B:180-421 [Jmol] [rasmolscript] [script source]     - Domain d1v9lb2, region B:4-179 [Jmol] [rasmolscript] [script source]     - Domain d1v9lc1, region C:180-421 [Jmol] [rasmolscript] [script source]     - Domain d1v9lc2, region C:4-179 [Jmol] [rasmolscript] [script source]     - Domain d1v9ld1, region D:180-421 [Jmol] [rasmolscript] [script source]     - Domain d1v9ld2, region D:4-179 [Jmol] [rasmolscript] [script source]     - Domain d1v9le1, region E:180-421 [Jmol] [rasmolscript] [script source]     - Domain d1v9le2, region E:4-179 [Jmol] [rasmolscript] [script source]     - Domain d1v9lf1, region F:180-421 [Jmol] [rasmolscript] [script source]     - Domain d1v9lf2, region F:4-179 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v9l_C] [1v9l] [1v9l_A] [1v9l_E] [1v9l_D] [1v9l_B] [1v9l_F] SWISS-PROT database: [Q9Y8I4] Domain organization of [Q9Y8I4_PYRIS] by SWISSPFAM Domain found in 1V9L: [ELFV_dehydrog ] by SMART

Other resources with information on 1V9L

Community annotation for 1V9L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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