1VA1 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 31 Modelsresolution
ligand ZN enzyme
Primary referenceNMR structure of transcription factor Sp1 DNA binding domain., Oka S, Shiraishi Y, Yoshida T, Ohkubo T, Sugiura Y, Kobayashi Y, Biochemistry 2004 Dec 28;43(51):16027-35. PMID:15609997
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (1va1.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1VA1
  • CSU: Contacts of Structural Units for 1VA1
  • Original NMR restraints for 1VA1 from PDB
  • Retrieve 1VA1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VA1 from S2C, [Save to disk]
  • View 1VA1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1va1] [1va1_A]
  • SWISS-PROT database: [P08047]
  • Domain found in 1VA1: [ZnF_C2H2 ] by SMART

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