1VBF date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • protein-L-isoaspartate (D-as...


  • Primary referenceHow oligomerization contributes to the thermostability of an archaeon protein. Protein L-isoaspartyl-O-methyltransferase from Sulfolobus tokodaii., Tanaka Y, Tsumoto K, Yasutake Y, Umetsu M, Yao M, Fukada H, Tanaka I, Kumagai I, J Biol Chem 2004 Jul 30;279(31):32957-67. Epub 2004 May 27. PMID:15169774
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (1vbf.pdb1.gz) 225 Kb
  • Biological Unit Coordinates (1vbf.pdb2.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 1VBF
  • CSU: Contacts of Structural Units for 1VBF
  • Likely Quarternary Molecular Structure file(s) for 1VBF
  • Structure Factors (390 Kb)
  • Retrieve 1VBF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VBF from S2C, [Save to disk]
  • Re-refined 1vbf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VBF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vbf] [1vbf_A] [1vbf_B] [1vbf_C] [1vbf_D]
  • SWISS-PROT database: [Q972K9]

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