1VEW Oxidoreductase date Jan 20, 1998
title Manganese Superoxide Dismutase From Escherichia Coli
authors R.A.Edwards, H.M.Baker, M.M.Whittaker, J.W.Whittaker, G.B.Jameson, E.N.Baker
compound source
Molecule: Manganese Superoxide Dismutase
Chain: A, B, C, D
Synonym: Mnsod, Mnsd
Ec: 1.15.1.1
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Ab2463pdt1-5
symmetry Space Group: C 2 2 21
R_factor 0.188 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.840 108.910 182.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MN, OH enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1EN6, 1I08
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (1vew.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (1vew.pdb2.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 1VEW
  • CSU: Contacts of Structural Units for 1VEW
  • Likely Quarternary Molecular Structure file(s) for 1VEW
  • Structure Factors (451 Kb)
  • Retrieve 1VEW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VEW from S2C, [Save to disk]
  • Re-refined 1vew structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VEW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VEW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VEW, from MSDmotif at EBI
  • Genome occurence of 1VEW's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vewa1, region A:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d1vewa2, region A:91-205 [Jmol] [rasmolscript] [script source]
        - Domain d1vewb1, region B:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d1vewb2, region B:91-205 [Jmol] [rasmolscript] [script source]
        - Domain d1vewc1, region C:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d1vewc2, region C:91-205 [Jmol] [rasmolscript] [script source]
        - Domain d1vewd1, region D:1-90 [Jmol] [rasmolscript] [script source]
        - Domain d1vewd2, region D:91-205 [Jmol] [rasmolscript] [script source]
  • Fold representative 1vew from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vew_C] [1vew_A] [1vew] [1vew_B] [1vew_D]
  • SWISS-PROT database: [P00448]
  • Domain organization of [SODM_ECOLI] by SWISSPFAM
  • Other resources with information on 1VEW
  • Community annotation for 1VEW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1VEW from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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