1VGK Immune System date Apr 27, 2004
title The Crystal Structure Of Class I Major Histocompatibility Co 2kd At 2.0 A Resolution
authors M.Zhou, Y.Xu, Y.Liu, G.F.Gao, P.Tien, Z.Rao
compound source
Molecule: H-2 Class I Histocompatibility Antigen, K-D Alpha
Chain: A
Synonym: H-2kd
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De23)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Beta-2-Microglobulin
Chain: B
Synonym: Hdcma22p
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Syvntnmgl
Chain: C
Engineered: Yes
Synthetic: Yes
Other_details: Synthetic Polypeptide
symmetry Space Group: P 21 21 2
R_factor 0.190 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.082 110.389 47.015 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.06 Å
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1vgk.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 1VGK
  • Likely Quarternary Molecular Structure file(s) for 1VGK
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  • Retrieve 1VGK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VGK from S2C, [Save to disk]
  • Re-refined 1vgk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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    • Visual 3D analysis of 1VGK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
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  • 3D motif for 1VGK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vgk_B] [1vgk_C] [1vgk] [1vgk_A]
  • SWISS-PROT database: [P61769] [P01902]
  • Domain organization of [B2MG_HUMAN] [HA1D_MOUSE] by SWISSPFAM
  • Domain found in 1VGK: [IGc1 ] by SMART
    • Other resources with information on 1VGK
  • Community annotation for 1VGK at PDBWiki (http://pdbwiki.org)
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