1VLK Cytokine date Feb 14, 1997
title Structure Of Viral Interleukin-10
authors A.Zdanov, C.Schalk-Hihi, A.Wlodawer
compound source
Molecule: Viral Interleukin-10
Chain: A
Synonym: Bcrf1 Protein
Engineered: Yes
Organism_scientific: Human Herpesvirus 4
Organism_common: Epstein-Barr Virus
Organism_taxid: 10376
Strain: Gd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.191 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.270 36.270 219.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
related structures by homologous chain: 1ILK, 1LK3
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytokine activity


  • Primary referenceCrystal structure of Epstein-Barr virus protein BCRF1, a homolog of cellular interleukin-10., Zdanov A, Schalk-Hihi C, Menon S, Moore KW, Wlodawer A, J Mol Biol 1997 May 2;268(2):460-7. PMID:9159483
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1vlk.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 1VLK
  • Likely Quarternary Molecular Structure file(s) for 1VLK
  • Structure Factors (120 Kb)
  • Retrieve 1VLK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VLK from S2C, [Save to disk]
  • Re-refined 1vlk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VLK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VLK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VLK, from MSDmotif at EBI
  • Genome occurence of 1VLK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vlk__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vlk] [1vlk_A]
  • SWISS-PROT database: [P03180]
  • Domain organization of [IL10H_EBVB9] by SWISSPFAM
  • Domain found in 1VLK: [IL10 ] by SMART
  • Other resources with information on 1VLK
  • Community annotation for 1VLK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science