1VPP	Growth Factor Growth Factor Inhibitor	date	Oct 09, 1998
title	Complex Between Vegf And A Receptor Blocking Peptide
authors	C.Wiesmann, H.W.Christinger, A.G.Cochran, B.C.Cunningham, W.J.Fairbrother, C.J.Keenan, G.Meng, A.M.De Vos
compound		source
Molecule: Protein (Vascular Endothelial Growth Factor) Chain: V, W Fragment: Receptor Binding Domain Synonym: Vegf, Vascular Permeability Factor, Vpf Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Protein (Peptide V108) Chain: X, Y Fragment: Receptor Blocking Peptide Engineered: Yes		Synthetic: Yes Other_details: This Sequence Is Chemically Synthesized
symmetry	Space Group: P 21 21 21	R_factor 0.190 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.703 74.661 79.883 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
related structures	by homologous chain: 1FLT, 2VPF
Gene Ontology	Chain Function Process Component W, V
Primary reference	Crystal structure of the complex between VEGF and a receptor-blocking peptide., Wiesmann C, Christinger HW, Cochran AG, Cunningham BC, Fairbrother WJ, Keenan CJ, Meng G, de Vos AM, Biochemistry 1998 Dec 22;37(51):17765-72. PMID:9922142

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (1vpp.pdb1.gz) 44 Kb CSU: Contacts of Structural Units for 1VPP Likely Quarternary Molecular Structure file(s) for 1VPP Retrieve 1VPP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VPP from S2C, [Save to disk]

View 1VPP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VPP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VPP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vppv_, region V [Jmol] [rasmolscript] [script source]     - Domain d1vppw_, region W [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vpp_X] [1vpp_W] [1vpp_V] [1vpp_Y] [1vpp] SWISS-PROT database: [P15692] Domain organization of [VEGFA_HUMAN] by SWISSPFAM Domain found in 1VPP: [PDGF ] by SMART

Other resources with information on 1VPP

Community annotation for 1VPP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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