1VQO date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 1MA, CD, CL, K, MG, NA, OMG, OMU, PPU, PSU, SR, UR3 enzyme
note 1VQO is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


A


B


C


D


E


F
  • ribonuclease P activity


    • G


    H


    I


    J


    K


    L


    M


    N


    O


    P


    Q


    R


    S


    T


    U


    V


    W


    X


    Y


    Z


    Primary referenceStructural insights into the roles of water and the 2' hydroxyl of the P site tRNA in the peptidyl transferase reaction., Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz TA, Mol Cell 2005 Nov 11;20(3):437-48. PMID:16285925
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1980 Kb) [Save to disk]
  • Biological Unit Coordinates (1vqo.pdb1.gz) 1940 Kb
  • LPC: Ligand-Protein Contacts for 1VQO
  • CSU: Contacts of Structural Units for 1VQO
  • Likely Quarternary Molecular Structure file(s) for 1VQO
  • Structure Factors (7946 Kb)
  • Retrieve 1VQO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VQO from S2C, [Save to disk]
  • Re-refined 1vqo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VQO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vqo] [1vqo_J] [1vqo_K] [1vqo_L] [1vqo_M] [1vqo_N] [1vqo_O] [1vqo_P] [1vqo_Q] [1vqo_R] [1vqo_S] [1vqo_T] [1vqo_U] [1vqo_V] [1vqo_W] [1vqo_X] [1vqo_Y] [1vqo_Z] [1vqo_0] [1vqo_1] [1vqo_2] [1vqo_3] [1vqo_4] [1vqo_9] [1vqo_A] [1vqo_B] [1vqo_C] [1vqo_D] [1vqo_E] [1vqo_F] [1vqo_G] [1vqo_H] [1vqo_I]
  • SWISS-PROT database: [P60617] [P14122] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743] [P15825]
  • Domains found in 1VQO: [HhH1] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART

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