1VRG Crystal structure of propionyl-CoA carboxylase, beta subunit (TM0716) from THERMOTOGA MARITIMA at 2.30 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.2098
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand BCT, MG, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (504 Kb) [Save to disk]
  • Biological Unit Coordinates (1vrg.pdb1.gz) 490 Kb
  • LPC: Ligand-Protein Contacts for 1VRG
  • CSU: Contacts of Structural Units for 1VRG
  • Likely Quarternary Molecular Structure file(s) for 1VRG
  • Structure Factors (10924 Kb)
  • Retrieve 1VRG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VRG from S2C, [Save to disk]
  • Re-refined 1vrg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VRG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VRG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VRG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vrg_F] [1vrg_A] [1vrg_B] [1vrg_C] [1vrg_E] [1vrg] [1vrg_D]
  • SWISS-PROT database: [Q9WZH5]
  • Domain organization of [Q9WZH5_THEMA] by SWISSPFAM
  • Other resources with information on 1VRG
  • Community annotation for 1VRG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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