1VTM Virus Rna date Mar 30, 1992
title Structure Of The U2 Strain Of Tobacco Mosaic Virus Refined A Angstroms Resolution Using X-Ray Fiber Diffraction
authors G.Stubbs, R.Pattanayek
compound source
Molecule: Rna (5'-R(Pgpapa)-3')
Chain: R
Engineered: Yes
 Synthetic: Yes

Molecule: Coat Protein
Chain: P
Engineered: Yes
symmetry Space Group: P 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Fiber Diffractionresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceStructure of the U2 strain of tobacco mosaic virus refined at 3.5 A resolution using X-ray fiber diffraction., Pattanayek R, Stubbs G, J Mol Biol 1992 Nov 20;228(2):516-28. PMID:1453461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1vtm.pdb1.gz) 1260 Kb
  • CSU: Contacts of Structural Units for 1VTM
  • Likely Quarternary Molecular Structure file(s) for 1VTM
  • Retrieve 1VTM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VTM from S2C, [Save to disk]
    • View 1VTM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VTM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VTM, from MSDmotif at EBI
  • Genome occurence of 1VTM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vtmp_, region P [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vtm] [1vtm_R] [1vtm_P]
  • SWISS-PROT database: [P03579]
  • Domain organization of [COAT_TMGMV] by SWISSPFAM
    • Other resources with information on 1VTM
  • Community annotation for 1VTM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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