1VYD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	HEM	enzyme
related structures	by homologous chain: 1C2R
Gene Ontology	Chain Function Process Component A, B electron transfer activity
Primary reference	Protein dynamics in the region of the sixth ligand methionine revealed by studies of imidazole binding to Rhodobacter capsulatus cytochrome c2 hinge mutants., Dumortier C, Fitch J, Van Petegem F, Vermeulen W, Meyer TE, Van Beeumen JJ, Cusanovich MA, Biochemistry 2004 Jun 22;43(24):7717-24. PMID:15196014

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (1vyd.pdb1.gz) 20 Kb Biological Unit Coordinates (1vyd.pdb2.gz) 20 Kb LPC: Ligand-Protein Contacts for 1VYD CSU: Contacts of Structural Units for 1VYD Likely Quarternary Molecular Structure file(s) for 1VYD Structure Factors (185 Kb) Retrieve 1VYD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VYD from S2C, [Save to disk] Re-refined 1vyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VYD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vyd] [1vyd_A] [1vyd_B] SWISS-PROT database: [P00094]

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