1VYI	Transferase	date	Apr 30, 2004
title	Structure Of The C-Terminal Domain Of The Polymerase Cofacto Rabies Virus: Insights In Function And Evolution.
authors	M.Mavrakis, A.A.Mccarthy, S.Roche, D.Blondel, R.W.H.Ruigrok
compound		source
Molecule: Rna Polymerase Alpha Subunit Chain: A Fragment: C-Terminal Domain, Residues 186-297 Synonym: Phosphoprotein, Nonstructural Protein, M1 Ec: 2.7.7.48 Engineered: Yes		Organism_scientific: Rabies Virus Cvs-11 Organism_taxid: 11294 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf21 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Acnpvm1
symmetry	Space Group: P 31 2 1	R_factor 0.173 R_Free 0.195
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.300 44.400 106.210 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	GOL	enzyme	Transferase E.C.2.7.7.48 BRENDA
note	1VYI is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and function of the C-terminal domain of the polymerase cofactor of rabies virus., Mavrakis M, McCarthy AA, Roche S, Blondel D, Ruigrok RW, J Mol Biol. 2004 Oct 29;343(4):819-31. PMID:15476803

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk] Biological Unit Coordinates (1vyi.pdb1.gz) 22 Kb LPC: Ligand-Protein Contacts for 1VYI CSU: Contacts of Structural Units for 1VYI Likely Quarternary Molecular Structure file(s) for 1VYI Structure Factors (245 Kb) Retrieve 1VYI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VYI from S2C, [Save to disk] Re-refined 1vyi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VYI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VYI

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1VYI from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VYI, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vyia_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vyi] [1vyi_A] SWISS-PROT database: [P22363] Domain organization of [PHOSP_RABVC] by SWISSPFAM

Other resources with information on 1VYI

Community annotation for 1VYI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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