1W0K	Hydrolase	date	Jun 08, 2004
title	Adp Inhibited Bovine F1-Atpase
authors	R.Kagawa, M.G.Montgomery, K.Braig, J.E.Walker, A.G.W.Leslie
compound		source
Molecule: Atp Synthase Alpha Chain Heart Isoform, Mitochondrial Precursor; Chain: A, B, C Synonym: Bovine Mitochondrial F1-Atpase\, Alpha Chain Ec: 3.6.3.14		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle
Molecule: Atp Synthase Beta Chain, Mitochondrial Precursor Chain: D, E, F Synonym: Bovine Mitochondrial F1-Atpase\, Beta Chain Ec: 3.6.3.14		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle
Molecule: Atp Synthase Gamma Chain, Mitochondrial Precursor; Chain: G Synonym: Bovine Mitochondrial F1-Atpase\, Gamma Chain Ec: 3.6.3.14		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle
symmetry	Space Group: P 21 21 21	R_factor 0.222 R_Free 0.278
crystal cell	length a length b length c angle alpha angle beta angle gamma 283.036 107.608 139.644 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.85 Å
ligand	ADP, GOL, MG, PO4	enzyme	Hydrolase E.C.3.6.3.14 BRENDA
related structures	by homologous chain: 1BMF, 1H8H
Gene Ontology	Chain Function Process Component A, C, B F, D, E G
Primary reference	The structure of bovine F1-ATPase inhibited by ADP and beryllium fluoride., Kagawa R, Montgomery MG, Braig K, Leslie AG, Walker JE, EMBO J. 2004 Jul 21;23(14):2734-44. Epub 2004 Jul 1. PMID:15229653

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (470 Kb) [Save to disk] Biological Unit Coordinates (1w0k.pdb1.gz) 460 Kb LPC: Ligand-Protein Contacts for 1W0K CSU: Contacts of Structural Units for 1W0K Likely Quarternary Molecular Structure file(s) for 1W0K Structure Factors (751 Kb) Retrieve 1W0K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1W0K from S2C, [Save to disk] Re-refined 1w0k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1W0K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1W0K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1W0K, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1w0ka2, region A:24-94 [Jmol] [rasmolscript] [script source]     - Domain d1w0ka1, region A:380-510 [Jmol] [rasmolscript] [script source]     - Domain d1w0ka3, region A:95-379 [Jmol] [rasmolscript] [script source]     - Domain d1w0kb2, region B:24-94 [Jmol] [rasmolscript] [script source]     - Domain d1w0kb1, region B:380-510 [Jmol] [rasmolscript] [script source]     - Domain d1w0kb3, region B:95-379 [Jmol] [rasmolscript] [script source]     - Domain d1w0kc2, region C:24-94 [Jmol] [rasmolscript] [script source]     - Domain d1w0kc1, region C:380-510 [Jmol] [rasmolscript] [script source]     - Domain d1w0kc3, region C:95-379 [Jmol] [rasmolscript] [script source]     - Domain d1w0kd1, region D:358-474 [Jmol] [rasmolscript] [script source]     - Domain d1w0kd3, region D:82-357 [Jmol] [rasmolscript] [script source]     - Domain d1w0kd2, region D:9-81 [Jmol] [rasmolscript] [script source]     - Domain d1w0ke1, region E:358-474 [Jmol] [rasmolscript] [script source]     - Domain d1w0ke3, region E:82-357 [Jmol] [rasmolscript] [script source]     - Domain d1w0ke2, region E:9-81 [Jmol] [rasmolscript] [script source]     - Domain d1w0kf1, region F:358-474 [Jmol] [rasmolscript] [script source]     - Domain d1w0kf3, region F:82-357 [Jmol] [rasmolscript] [script source]     - Domain d1w0kf2, region F:9-81 [Jmol] [rasmolscript] [script source]     - Domain d1w0kg_, region G [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1w0k_B] [1w0k_G] [1w0k_F] [1w0k_D] [1w0k_E] [1w0k_C] [1w0k_A] [1w0k] SWISS-PROT database: [P19483] [P00829] [P05631] Domain organization of [ATPA_BOVIN] [ATPB_BOVIN] [ATPG_BOVIN] by SWISSPFAM Domain found in 1W0K: [AAA ] by SMART

Other resources with information on 1W0K

Community annotation for 1W0K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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