1W2Z Oxidoreductase date Jul 11, 2004
title Psao And Xenon
authors A.P.Duff, D.M.Trambaiolo, A.E.Cohen, P.J.Ellis, G.A.Juda, E.M.She D.B.Langley, D.M.Dooley, H.C.Freeman, J.M.Guss
compound source
Molecule: Amine Oxidase, Copper Containing
Chain: A, B, C, D
Fragment: Holoenzyme Plus Xenon, Residues 26-674
Ec: 1.4.3.6
 Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Other_details: Seedling
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.507 196.268 89.665 90.00 107.46 90.00
method X-Ray Diffractionresolution 2.24 Å
ligand CU, IOD, MN, NAG, TPQ, XE enzyme Oxidoreductase E.C.1.4.3.6 BRENDA
related structures by homologous chain: 1KSI
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceUsing xenon as a probe for dioxygen-binding sites in copper amine oxidases., Duff AP, Trambaiolo DM, Cohen AE, Ellis PJ, Juda GA, Shepard EM, Langley DB, Dooley DM, Freeman HC, Guss JM, J Mol Biol. 2004 Nov 26;344(3):599-607. PMID:15533431
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (782 Kb) [Save to disk]
  • Biological Unit Coordinates (1w2z.pdb1.gz) 386 Kb
  • Biological Unit Coordinates (1w2z.pdb2.gz) 388 Kb
  • LPC: Ligand-Protein Contacts for 1W2Z
  • CSU: Contacts of Structural Units for 1W2Z
  • Likely Quarternary Molecular Structure file(s) for 1W2Z
  • Structure Factors (3632 Kb)
  • Retrieve 1W2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W2Z from S2C, [Save to disk]
  • Re-refined 1w2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1W2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1W2Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W2Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w2za1, region A:207-647 [Jmol] [rasmolscript] [script source]
        - Domain d1w2za2, region A:6-98 [Jmol] [rasmolscript] [script source]
        - Domain d1w2za3, region A:99-206 [Jmol] [rasmolscript] [script source]
        - Domain d1w2zb1, region B:207-647 [Jmol] [rasmolscript] [script source]
        - Domain d1w2zb2, region B:6-98 [Jmol] [rasmolscript] [script source]
        - Domain d1w2zb3, region B:99-206 [Jmol] [rasmolscript] [script source]
        - Domain d1w2zc1, region C:207-647 [Jmol] [rasmolscript] [script source]
        - Domain d1w2zc2, region C:6-98 [Jmol] [rasmolscript] [script source]
        - Domain d1w2zc3, region C:99-206 [Jmol] [rasmolscript] [script source]
        - Domain d1w2zd1, region D:207-647 [Jmol] [rasmolscript] [script source]
        - Domain d1w2zd2, region D:6-98 [Jmol] [rasmolscript] [script source]
        - Domain d1w2zd3, region D:99-206 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w2z_D] [1w2z_A] [1w2z_C] [1w2z] [1w2z_B]
  • SWISS-PROT database: [Q43077]
  • Domain organization of [AMO_PEA] by SWISSPFAM
    • Other resources with information on 1W2Z
  • Community annotation for 1W2Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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