1W3D Transferase date Jul 14, 2004
title Nmr Structure Of The Peripheral-Subunit Binding Domain Of Ba Stearothermophilus E2p
authors M.D.Allen, R.W.Broadhurst, R.G.Solomon, R.N.Perham
compound source
Molecule: Dihydrolipoyllysine-Residue Acetyltransferase Com Pyruvate Dehydrogenase;
Chain: A
Fragment: Residues 118-170
Synonym: Complex Dihydropoamide Acetyltransferase
Ec: 2.3.1.12
Engineered: Yes
 Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_vector: Pet11c
methodSolution NMR
ligand
enzyme Transferase E.C.2.3.1.12 BRENDA
related structures by homologous chain: 1EBD, 2PDD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInteraction of the E2 and E3 components of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus. Use of a truncated protein domain in NMR spectroscopy., Allen MD, Broadhurst RW, Solomon RG, Perham RN, FEBS J. 2005 Jan;272(1):259-68. PMID:15634348
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk]
  • Biological Unit Coordinates (1w3d.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1W3D
  • Original NMR restraints for 1W3D from PDB
  • Retrieve 1W3D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W3D from S2C, [Save to disk]
    • View 1W3D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1W3D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W3D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w3da_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w3d] [1w3d_A]
  • SWISS-PROT database: [P11961]
  • Domain organization of [ODP2_BACST] by SWISSPFAM
    • Other resources with information on 1W3D
  • Community annotation for 1W3D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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