1W51 BACE (Beta Secretase) in complex with a nanomolar non-peptidic inhibitor date
authors Patel, S., Vuillard, L., Cleasby, A., Murray, C.W., Yon, J.
compound source
symmetry
R_factor
R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand IOD, L01 BindingDB enzyme
related structures by homologous chain: 1M4H
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceApo and inhibitor complex structures of BACE (beta-secretase)., Patel S, Vuillard L, Cleasby A, Murray CW, Yon J, J Mol Biol. 2004 Oct 15;343(2):407-16. PMID:15451669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1w51.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 1W51
  • CSU: Contacts of Structural Units for 1W51
  • Likely Quarternary Molecular Structure file(s) for 1W51
  • Structure Factors (254 Kb)
  • Retrieve 1W51 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W51 from S2C, [Save to disk]
  • Re-refined 1w51 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W51 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W51
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W51, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w51a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w51] [1w51_A]
  • SWISS-PROT database: [P56817]
  • Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB.
  • Domain organization of [BACE1_HUMAN] by SWISSPFAM
  • Other resources with information on 1W51
  • Community annotation for 1W51 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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