1W6S	Oxidoreductase	date	Aug 23, 2004
title	The High Resolution Structure Of Methanol Dehydrogenase From Methylobacterium Extorquens
authors	P.A.Williams, L.Coates, F.Mohammed, R.Gill, P.T.Erskine, S.P.Wood C.Anthony, J.B.Cooper
compound		source
Molecule: Methanol Dehydrogenase Subunit 1 Chain: A, C Synonym: Mdh Large Subunit, Medh Ec: 1.1.99.8		Organism_scientific: Methylobacterium Extorquens Organism_taxid: 408
Molecule: Methanol Dehydrogenase Subunit 2 Chain: B, D Synonym: Mdh Small Subunit, Medh Ec: 1.1.99.8		Organism_scientific: Methylobacterium Extorquens Organism_taxid: 408
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.900 73.620 88.080 86.09 104.11 109.68
method	X-Ray Diffraction	resolution	1.20 Å
ligand	CA, GOL, PQQ	enzyme	Oxidoreductase E.C.1.1.99.8 BRENDA
note	1W6S is a representative structure
related structures	by homologous chain: 1G72
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	The atomic resolution structure of methanol dehydrogenase from Methylobacterium extorquens., Williams PA, Coates L, Mohammed F, Gill R, Erskine PT, Coker A, Wood SP, Anthony C, Cooper JB, Acta Crystallogr D Biol Crystallogr. 2005 Jan;61(Pt 1):75-9. Epub 2004 Dec, 17. PMID:15608378

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (485 Kb) [Save to disk] Biological Unit Coordinates (1w6s.pdb1.gz) 479 Kb LPC: Ligand-Protein Contacts for 1W6S CSU: Contacts of Structural Units for 1W6S Likely Quarternary Molecular Structure file(s) for 1W6S Structure Factors (5948 Kb) Retrieve 1W6S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1W6S from S2C, [Save to disk] Re-refined 1w6s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1W6S in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1W6S

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1W6S 1W6SA 1W6SB 1W6SC 1W6SD from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1W6S, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1w6sa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1w6sb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1w6sc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1w6sd_, region D [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1w6s_A] [1w6s_C] [1w6s_B] [1w6s_D] [1w6s] SWISS-PROT database: [P16027] [P14775] Domain organization of [DHM1_METEA] [DHM2_METEA] by SWISSPFAM Domain found in 1W6S: [PQQ ] by SMART

Other resources with information on 1W6S

Community annotation for 1W6S at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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