1W7S Luminescent Protein date Sep 09, 2004
title Wild-Type Aequorea Victoria Green Fluorescent Protein
authors J.J.Van Thor, G.Y.Georgiev, M.Towrie, J.T.Sage
compound source
Molecule: Green Fluorescent Protein
Chain: A, B, C, D
Engineered: Yes
Mutation: Yes
Other_details: The Chromophore, Gys, Is Part Of The Peptide Between Residues 64 And 68.
Organism_scientific: Aequorea Victoria
Organism_taxid: 6100
Organ: Photogenic Organ
Tissue: Circumoral Ring Canal
Expression_system: Escherichia Coli M15
Expression_system_taxid: 1007065
symmetry Space Group: C 1 2 1
R_factor 0.176 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.968 52.730 141.628 90.00 120.01 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand GYS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceUltrafast and low barrier motions in the photoreactions of the green fluorescent protein., van Thor JJ, Georgiev GY, Towrie M, Sage JT, J Biol Chem. 2005 Sep 30;280(39):33652-9. Epub 2005 Jul 20. PMID:16033764
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (1w7s.pdb1.gz) 165 Kb
  • LPC: Ligand-Protein Contacts for 1W7S
  • CSU: Contacts of Structural Units for 1W7S
  • Likely Quarternary Molecular Structure file(s) for 1W7S
  • Structure Factors (1203 Kb)
  • Retrieve 1W7S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W7S from S2C, [Save to disk]
  • Re-refined 1w7s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W7S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W7S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1W7S, from MSDmotif at EBI
  • Fold representative 1w7s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w7s] [1w7s_D] [1w7s_B] [1w7s_C] [1w7s_A]
  • SWISS-PROT database: [P42212]
  • Domain organization of [GFP_AEQVI] by SWISSPFAM
  • Other resources with information on 1W7S
  • Community annotation for 1W7S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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