1W8B	Hydrolase	date	Sep 17, 2004
title	Factor7 - 413 Complex
authors	J.Ackermann, L.Alig, D.W.Banner, H.J.Boehm, K.Groebke-Zbinden, K T.Lave, H.Kuehne, U.Obst-Sander, M.A.Riederer, M.Stahl, T.B.Tsch L.Weber, H.P.Wessel
compound		source
Molecule: Blood Coagulation Factor Viia Chain: H Fragment: Factor Vii Heavy Chain, Residues 213-466 Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven; Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Blood Coagulation Factor Viia Chain: L Fragment: Factor Vii Light Chain, Residues 148-204 Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven; Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 43 21 2	R_factor 0.194 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.846 82.846 147.768 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	413, CA BindingDB	enzyme	Hydrolase E.C.3.4.21.21 BRENDA
Gene Ontology	Chain Function Process Component H L
Primary reference	Selective and orally bioavailable phenylglycine tissue factor/factor VIIa inhibitors., Zbinden KG, Obst-Sander U, Hilpert K, Kuhne H, Banner DW, Bohm HJ, Stahl M, Ackermann J, Alig L, Weber L, Wessel HP, Riederer MA, Tschopp TB, Lave T, Bioorg Med Chem Lett. 2005 Dec 1;15(23):5344-52. Epub 2005 Oct 4. PMID:16213138

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1w8b.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 1W8B CSU: Contacts of Structural Units for 1W8B Likely Quarternary Molecular Structure file(s) for 1W8B Structure Factors (77 Kb) Retrieve 1W8B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1W8B from S2C, [Save to disk] Re-refined 1w8b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1W8B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1W8B

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1W8B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1w8b] [1w8b_L] [1w8b_H] SWISS-PROT database: [P08709] Domain organization of [FA7_HUMAN] by SWISSPFAM Domains found in 1W8B: [EGF] [Tryp_SPc ] by SMART

Other resources with information on 1W8B

Community annotation for 1W8B at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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