1W92 Oxygen Storage Transport date Oct 05, 2004
title The Structure Of Carbomonoxy Murine Neuroglobin Reveals A He Sliding Mechanism For Affinity Regulation
authors B.Vallone, K.Nienhaus, A.Matthes, M.Brunori, G.U.Nienhaus
compound source
Molecule: Neuroglobin
Chain: A
Engineered: Yes
Mutation: Yes
Other_details: Carbomonoxy (Co) Derivative Of Heme Ferrous Neuroglobin
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Organ: Brain
Tissue: Nerve
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: H 3 2
R_factor 0.260 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.373 88.373 110.983 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand CMO, HEM enzyme
related structures by homologous chain: 1OJ6, 1Q1F
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of carbonmonoxy neuroglobin reveals a heme-sliding mechanism for control of ligand affinity., Vallone B, Nienhaus K, Matthes A, Brunori M, Nienhaus GU, Proc Natl Acad Sci U S A. 2004 Dec 14;101(50):17351-6. Epub 2004 Nov 17. PMID:15548613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1w92.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 1W92
  • CSU: Contacts of Structural Units for 1W92
  • Likely Quarternary Molecular Structure file(s) for 1W92
  • Structure Factors (139 Kb)
  • Retrieve 1W92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W92 from S2C, [Save to disk]
  • Re-refined 1w92 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W92
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W92, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w92a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w92] [1w92_A]
  • SWISS-PROT database: [Q9ER97]
  • Domain organization of [NGB_MOUSE] by SWISSPFAM
  • Other resources with information on 1W92
  • Community annotation for 1W92 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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