1WC8 Transport Protein date Nov 10, 2004
title The Crystal Structure Of Mouse Bet3p
authors Y.G.Kim, M.Sacher, B.H.Oh
compound source
Molecule: Trafficking Protein Particle Complex Subunit3
Chain: A
Synonym: Bet3 Homolog, Bet3p
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex 4t1
symmetry Space Group: P 43 21 2
R_factor 0.2171 R_Free 0.2604
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.246 54.246 113.757 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.9 Å
ligand MYR enzyme
related structures by homologous chain: 1VPG, 1WC9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of bet3 reveals a novel mechanism for Golgi localization of tethering factor TRAPP., Kim YG, Sohn EJ, Seo J, Lee KJ, Lee HS, Hwang I, Whiteway M, Sacher M, Oh BH, Nat Struct Mol Biol. 2005 Jan;12(1):38-45. Epub 2004 Dec 19. PMID:15608655
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1wc8.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 1WC8
  • CSU: Contacts of Structural Units for 1WC8
  • Likely Quarternary Molecular Structure file(s) for 1WC8
  • Structure Factors (75 Kb)
  • Retrieve 1WC8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WC8 from S2C, [Save to disk]
  • Re-refined 1wc8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WC8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WC8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WC8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wc8a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wc8_A] [1wc8]
  • SWISS-PROT database: [O55013]
  • Domain organization of [TPPC3_MOUSE] by SWISSPFAM
    • Other resources with information on 1WC8
  • Community annotation for 1WC8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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