1WEP Dna Binding Protein date May 25, 2004
title Solution Structure Of Phd Domain In Phf8
authors F.He, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, Y.Muto, S.Yokoyama, Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Phf8
Chain: A
Fragment: Phd Domain
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 4921501e09
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030408-65
Other_details: Cell Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
note 1WEP is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (382 Kb) [Save to disk]
  • Biological Unit Coordinates (1wep.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1WEP
  • CSU: Contacts of Structural Units for 1WEP
  • Original NMR restraints for 1WEP from PDB
  • Retrieve 1WEP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WEP from S2C, [Save to disk]
    • View 1WEP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WEP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WEP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wepa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wep_A] [1wep]
  • SWISS-PROT database: [Q80TJ7]
  • Domain organization of [PHF8_MOUSE] by SWISSPFAM
  • Domain found in 1WEP: [PHD ] by SMART
    • Other resources with information on 1WEP
  • Community annotation for 1WEP at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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