1WI1 Endocytosis Exocytosis date May 28, 2004
title Solution Structure Of The Ph Domain Of Human Calcium-Depende Activator Protein For Secretion (Caps)
authors M.Yoneyama, K.Izumi, M.Yoshida, N.Tochio, S.Koshiba, M.Inoue, T.Ki S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Calcium-Dependent Activator Protein For Secretion
Chain: A
Fragment: Ph Domain
Synonym: Kiaa1121 Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Hh10147
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030428-81
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
note 1WI1 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (652 Kb) [Save to disk]
  • Biological Unit Coordinates (1wi1.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1WI1
  • Retrieve 1WI1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WI1 from S2C, [Save to disk]
    • View 1WI1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WI1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WI1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wi1a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wi1_A] [1wi1]
  • SWISS-PROT database: [Q9ULU8]
  • Domain organization of [CAPS1_HUMAN] by SWISSPFAM
  • Domain found in 1WI1: [PH ] by SMART
    • Other resources with information on 1WI1
  • Community annotation for 1WI1 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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