1WQZ Dna date Oct 07, 2004
title Complicated Water Orientations In The Minor Groove Of B-Dna D(Ccattaatgg)2 Observed By Neutron Diffraction Measurements
authors S.Arai, T.Chatake, T.Ohhara, K.Kurihara, I.Tanaka, N.Suzuki, Z.Fuj H.Mizuno, N.Niimura
compound source
Molecule: 5'-D(Cpcpaptptpapaptpgpg)-3'
Chain: A, B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 32 2 1
R_factor 0.252 R_Free 0.274
length a length b length c angle alpha angle beta angle gamma
32.900 32.900 96.100 90.00 90.00 120.00
method Neutron Diffractionresolution 3.00 Å
Primary referenceComplicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements., Arai S, Chatake T, Ohhara T, Kurihara K, Tanaka I, Suzuki N, Fujimoto Z, Mizuno H, Niimura N, Nucleic Acids Res 2005 May 24;33(9):3017-24. Print 2005. PMID:15914673
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1wqz.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1WQZ
  • Likely Quarternary Molecular Structure file(s) for 1WQZ
  • Structure Factors (26 Kb)
  • Retrieve 1WQZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WQZ from S2C, [Save to disk]
  • View 1WQZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WQZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WQZ, from MSDmotif at EBI
  • Fold representative 1wqz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wqz] [1wqz_A] [1wqz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1WQZ
  • Community annotation for 1WQZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science