1WRD	Protein Transport Signaling Protein	date	Oct 14, 2004
title	Crystal Structure Of Tom1 Gat Domain In Complex With Ubiquit
authors	M.Akutsu, M.Kawasaki, Y.Katoh, T.Shiba, Y.Yamaguchi, R.Kato, K.Kat K.Nakayama, S.Wakatsuki
compound		source
Molecule: Target Of Myb Protein 1 Chain: A Fragment: Gat Domain Synonym: Tom1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dl41 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t-2
Molecule: Ubiquitin Chain: B		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Tissue: Red Blood Cells
symmetry	Space Group: F 4 3 2	R_factor 0.213 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 168.317 168.317 168.317 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.75 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain., Akutsu M, Kawasaki M, Katoh Y, Shiba T, Yamaguchi Y, Kato R, Kato K, Nakayama K, Wakatsuki S, FEBS Lett. 2005 Oct 10;579(24):5385-91. PMID:16199040

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (1wrd.pdb1.gz) 34 Kb Biological Unit Coordinates (1wrd.pdb2.gz) 788 Kb CSU: Contacts of Structural Units for 1WRD Likely Quarternary Molecular Structure file(s) for 1WRD Structure Factors (181 Kb) Retrieve 1WRD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WRD from S2C, [Save to disk] Re-refined 1wrd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1WRD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1WRD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WRD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wrd] [1wrd_B] [1wrd_A] SWISS-PROT database: [O60784] [P62990] Domain organization of [TOM1_HUMAN] [UBIQ_BOVIN] by SWISSPFAM Domain found in 1WRD: [UBQ ] by SMART

Other resources with information on 1WRD

Community annotation for 1WRD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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