1WXO Hydrolase date Jan 27, 2005
title Structure Of Archaeal Trans-Editing Protein Alax In Complex
authors M.Sokabe, A.Okada, T.Nakashima, M.Yao, I.Tanaka
compound source
Molecule: Alanyl-Trna Synthetase
Chain: A, B, C
Synonym: Trans-Editing Protein Alax
Engineered: Yes
 Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 70601
Strain: Ot3
Gene: Ph0574
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus-(De3)-Ril-X
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.472 97.971 60.584 90.00 95.81 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • aminoacyl-tRNA editing activ...


    • Primary referenceMolecular basis of alanine discrimination in editing site., Sokabe M, Okada A, Yao M, Nakashima T, Tanaka I, Proc Natl Acad Sci U S A. 2005 Aug 16;102(33):11669-74. Epub 2005 Aug 8. PMID:16087889
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1wxo.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (1wxo.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (1wxo.pdb3.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1WXO
  • CSU: Contacts of Structural Units for 1WXO
  • Likely Quarternary Molecular Structure file(s) for 1WXO
  • Structure Factors (579 Kb)
  • Retrieve 1WXO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WXO from S2C, [Save to disk]
  • Re-refined 1wxo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WXO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WXO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WXO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wxo_C] [1wxo_A] [1wxo] [1wxo_B]
  • SWISS-PROT database: [O58307]
  • Domain organization of [ALAXS_PYRHO] by SWISSPFAM
    • Other resources with information on 1WXO
  • Community annotation for 1WXO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science