1X18 Structural Protein Rna date Apr 02, 2005
title Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s
authors M.R.Sharma, C.Barat, R.K.Agrawal
compound source
Molecule: 5'-R(Pcpgpapupgpgpcpgpapapg)-3'
Chain: A
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Rna (31-Mer)
Chain: B

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 5'-R(Pupupcpcpcpgpgpgpcpcpupgpgpgp Pgpc)-3';
Chain: C

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 5'-R(Pupgpupupgpgpgpupupapapgpupcp Papapcpgpapg)-3';
Chain: D

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S2
Chain: E

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S7
Chain: F

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S11
Chain: G

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S18
Chain: H

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Gtp-Binding Protein Era
Chain: X
Engineered: Yes

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11b
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 13.50 Å
Gene
Ontology
ChainFunctionProcessComponent
E


F


G


H


X


Primary referenceInteraction of Era with the 30S ribosomal subunit implications for 30S subunit assembly., Sharma MR, Barat C, Wilson DN, Booth TM, Kawazoe M, Hori-Takemoto C, Shirouzu M, Yokoyama S, Fucini P, Agrawal RK, Mol Cell. 2005 Apr 29;18(3):319-29. PMID:15866174
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1x18.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1X18
  • Likely Quarternary Molecular Structure file(s) for 1X18
  • Retrieve 1X18 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X18 from S2C, [Save to disk]
  • View 1X18 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1X18
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1X18, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x18_C] [1x18_H] [1x18_G] [1x18_A] [1x18_D] [1x18_X] [1x18] [1x18_F] [1x18_B] [1x18_E]
  • SWISS-PROT database: [P06616] [P80376] [Q5SLQ0] [P80382] [P80371] [P17291]
  • Domain organization of [ERA_ECOLI] [RS11_THET8] [RS18_THET8] [RS18_THETH] [RS2_THET8] [RS7_THET8] by SWISSPFAM
  • Other resources with information on 1X18
  • Community annotation for 1X18 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science