1X62 Structural Protein date May 17, 2005
title Solution Structure Of The Lim Domain Of Carboxyl Terminal Li Protein 1
authors X.R.Qin, T.Nagashima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: C-Terminal Lim Domain Protein 1
Chain: A
Fragment: Lim Domain
Synonym: Lim Domain Protein Clp-36, Elfin
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdlim1, Clim1, Clp36
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040830-06
Other_details: Cell Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (393 Kb) [Save to disk]
  • Biological Unit Coordinates (1x62.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1X62
  • CSU: Contacts of Structural Units for 1X62
  • Original NMR restraints for 1X62 from PDB
  • Retrieve 1X62 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1X62 from S2C, [Save to disk]
    • View 1X62 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1X62
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1X62, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1x62] [1x62_A]
  • SWISS-PROT database: [O00151]
  • Domain organization of [PDLI1_HUMAN] by SWISSPFAM
  • Domain found in 1X62: [LIM ] by SMART
    • Other resources with information on 1X62
  • Community annotation for 1X62 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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