1XBF Structural Genomics, Unknown Function date Aug 30, 2004
title X-Ray Structure Northeast Structural Genomics Consortium Target Car10 From C. Acetobutylicum
authors A.P.Kuzin, Y.Chen, S.Vorobiev, W.Yong, T.Acton, C.K.Ho, K.Conover, B.Cooper, M.Ciano, R.Xiao, G.Montelione, L.Tong, J.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Clostridium Acetobutylicum Q97kl0
Chain: A, B, C
Synonym: Car10
Engineered: Yes
 Organism_scientific: Clostridium Acetobutylicum
Organism_taxid: 1488
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.432 87.463 49.140 90.00 116.65 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MSE, SO4 enzyme
related structures by homologous chain: 1VMH
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (1xbf.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1XBF
  • CSU: Contacts of Structural Units for 1XBF
  • Likely Quarternary Molecular Structure file(s) for 1XBF
  • Structure Factors (721 Kb)
  • Retrieve 1XBF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XBF from S2C, [Save to disk]
  • Re-refined 1xbf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1XBF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XBF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XBF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xbfa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1xbfb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1xbfc_, region C [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xbf_A] [1xbf] [1xbf_B] [1xbf_C]
  • SWISS-PROT database: [Q97KL0]
  • Domain organization of [Q97KL0_CLOAB] by SWISSPFAM
    • Other resources with information on 1XBF
  • Community annotation for 1XBF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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