1XBU Hydrolase date Aug 31, 2004
title Streptomyces Griseus Aminopeptidase Complexed With P-Iodo-D- Phenylalanine
authors V.Reiland, R.Gilboa, A.Spungin-Bialik, D.Schomburg, Y.Shoham, S.Blumberg, G.Shoham
compound source
Molecule: Aminopeptidase
Chain: A
Synonym: Sgap
Ec: 3.4.11.-
Organism_scientific: Streptomyces Griseus
Organism_taxid: 1911
Other_details: The Enzyme Is Isolated From The Commercially Available Enzyme Mixture "Pronase E".
symmetry Space Group: P 41 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.970 60.970 144.519 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand CA, IOY, ZN enzyme Hydrolase E.C.3.4.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (1xbu.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 1XBU
  • CSU: Contacts of Structural Units for 1XBU
  • Likely Quarternary Molecular Structure file(s) for 1XBU
  • Structure Factors (1343 Kb)
  • Retrieve 1XBU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XBU from S2C, [Save to disk]
  • Re-refined 1xbu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XBU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XBU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XBU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xbu_A] [1xbu]
  • SWISS-PROT database: [P80561]
  • Domain organization of [APX_STRGR] by SWISSPFAM
  • Other resources with information on 1XBU
  • Community annotation for 1XBU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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