1XFL Electron Transport date Sep 15, 2004
title Solution Structure Of Thioredoxin H1 From Arabidopsis Thalia
authors F.C.Peterson, B.L.Lytle, S.Sampath, D.Vinarov, E.Tyler, M.Shahan, J.L.Markley, B.F.Volkman, Center For Eukaryotic Structural Ge (Cesg)
compound source
Molecule: Thioredoxin H1
Chain: A
Synonym: Trxh1, Trx-H-1, Thioredoxin H-Type 1
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: At3g51030
Expression_system: Cell-Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Peu(N)His6-At3g51030
Other_details: Wheat Germ Cell-Free, In Vitro Expression
methodSolution NMR
related structures by homologous chain: 1TI3
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of thioredoxin h1 from Arabidopsis thaliana., Peterson FC, Lytle BL, Sampath S, Vinarov D, Tyler E, Shahan M, Markley JL, Volkman BF, Protein Sci. 2005 Aug;14(8):2195-200. Epub 2005 Jun 29. PMID:15987893
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (600 Kb) [Save to disk]
  • Biological Unit Coordinates (1xfl.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 1XFL
  • Original NMR restraints for 1XFL from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1XFL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XFL from S2C, [Save to disk]
    • View 1XFL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1XFL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XFL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xfla_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xfl_A] [1xfl]
  • SWISS-PROT database: [P29448]
  • Domain organization of [TRXH1_ARATH] by SWISSPFAM
    • Other resources with information on 1XFL
  • Community annotation for 1XFL at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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